John Flanagan is listed in the credits for the following albums:
| Year | Artist | Album | Role |
|---|---|---|---|
| 1988 | Steve Scott | Lost Horizon | Guitar Solo |
| 1995 | Love Coma | Language of Fools | Assistant Engineer, Lead Guitars |
| 1995 | Seventy Sevens | Tom Tom Blues | Engineer, Mixed |
| 1995 | Michael Roe | Safe As Milk | Mixed, Keyboards, Guitars, Special Effects |
| 1996 | Michael Roe | The Boat Ashore | Engineer |

