Jon Clarke is listed in the credits for the following albums:
| Year | Artist | Album | Role |
|---|---|---|---|
| 1984 | Bob and Joy Cull | Last Horizon | Flute, Oboe, Saxophone, Soprano Recorder, Sopranino |
| 1984 | Randy Stonehill | Celebrate This Heartbeat | Flute, English Horn |
| 1985 | Wendell Burton | Heart of Eternity | Woodwinds |
| 1986 | Phil Keaggy | Way Back Home | Soprano Sax, Flute, Clarinet, English Horn, Oboe |
| 1986 | Steve Camp | One on One | English Horn |
| 1987 | Steve Camp | After God's Own Heart | Soprano and Tenor Saxophones, Oboe, English Horn |
| 1991 | Tom Howard | Beyond the Barriers | Woodwinds, Soprano Sax Solo |
| 1994 | Phil Keaggy | Way Back Home | Woodwinds |
